Transcript: LINC01312:2

Basic information

LNCipedia transcript ID: LINC01312:2 
LNCipedia gene ID: LINC01312
RefSeq ID: NR_027030
Location (hg38): chr6:133821147-133853992
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3517 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011127; NONHSAT115003; NR_027030; NR_027030.1
Alternative gene names: XLOC_005467; linc-TCF21; MGC34034; LINC01312


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.1759 non-coding 
CPAT coding probability 63.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01312:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF21-1:2
3.1 lnc-TCF21-1:2
4.0 LINC01312:2
4.1 LINC01312:2
5.0 LINC01312:2
5.1 LINC01312:2
5.2 LINC01312:2