Transcript: LINC01312:3

Basic information

LNCipedia transcript ID: LINC01312:3 
HGNC Gene Symbol: LINC01312    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1312
Ensembl Gene ID: ENSG00000223586
Ensembl Transcript ID: ENST00000412745
Location (hg38): chr6:133837184-133851800
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 775 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412745; TCONS_00011375; ENST00000412745.1; RP4-662A9.2-002; OTTHUMT00000042290.1; NONHSAT115004
Alternative gene names: ENSG00000223586; XLOC_005467; linc-TCF21; RP4-662A9.2; ENSG00000223586.1; OTTHUMG00000015606.1; ENSG00000223586.5; LINC01312; MGC34034


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.204 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01312:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF21-1:3
3.1 lnc-TCF21-1:3
4.0 LINC01312:3
4.1 LINC01312:3
5.0 LINC01312:3
5.1 LINC01312:3
5.2 LINC01312:3