Transcript: LINC01315:12

Basic information

LNCipedia transcript ID: LINC01315:12 
LNCipedia gene ID: LINC01315
Location (hg38): chr22:42364407-42369249
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4843 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000229891.1|ENCT00000283303.1
Alternative gene names: lnc-C22orf32-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.6399 non-coding 
CPAT coding probability 5.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01315:12 no no no no

Available literature

  1. Nie (2017), lncRNA C22orf32-1 contributes to the tumorigenesis of nasopharyngeal carcinoma., Oncol Lett
  2. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.
  3. Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01315:12
5.0 LINC01315:12
5.1 LINC01315:12
5.2 LINC01315:12