Transcript: LINC01317:2

Basic information

LNCipedia transcript ID: LINC01317:2 
LNCipedia gene ID: LINC01317
Location (hg38): chr2:33706886-34297746
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 772 bp
Exons: 6
Sources: Refseq - Dec 2014
Alternative transcript names: NR_126403
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.7839 non-coding 
CPAT coding probability 2.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01317:2 no no no no

Available literature

  1. Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
  2. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASGRP3-1:3
4.0 LINC01317:2
4.1 LINC01317:2
5.0 LINC01317:2
5.1 LINC01317:2
5.2 LINC01317:2