Transcript: LINC01317:3

Basic information

LNCipedia transcript ID: LINC01317:3 
HGNC Gene Symbol: LINC01317    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1317
Ensembl Gene ID: ENSG00000203386
Ensembl Transcript ID: ENST00000442026
Location (hg38): chr2:33706908-34061047
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 677 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442026; ENST00000442026.1; AC009499.1-001; OTTHUMT00000325405.1; NONHSAT070027
Alternative gene names: ENSG00000203386; AC009499.1; ENSG00000203386.2; OTTHUMG00000152138.1; ENSG00000203386.6; LINC01317;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.7839 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01317:3 no no no no

Available literature

  1. Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
  2. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASGRP3-2:2
3.1 lnc-RASGRP3-1:2
4.0 LINC01317:3
4.1 LINC01317:3
5.0 LINC01317:3
5.1 LINC01317:3
5.2 LINC01317:3