Transcript: LINC01317:4

Basic information

LNCipedia transcript ID: LINC01317:4 
LNCipedia gene ID: LINC01317
Location (hg38): chr2:34286634-34384729
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 326 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT070034; FPKM1_group_15775_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -308.1673 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01317:4 no no no no

Available literature

  1. Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
  2. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASGRP3-3:2
4.0 LINC01317:4
4.1 LINC01317:4
5.0 LINC01317:4
5.1 LINC01317:4
5.2 LINC01317:4