Transcript: LINC01317:5

Basic information

LNCipedia transcript ID: LINC01317:5 
LNCipedia gene ID: LINC01317
Ensembl Gene ID: ENSG00000226785
Ensembl Transcript ID: ENST00000422558
Location (hg38): chr2:34383788-34635340
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422558; ENST00000422558.1; AC073218.1-001; OTTHUMT00000325415.1; NONHSAT070035
Alternative gene names: ENSG00000226785; AC073218.1; ENSG00000226785.1; OTTHUMG00000152141.1; ; AC068599.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.1249 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01317:5 no no no no

Available literature

  1. Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
  2. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASGRP3-3:1
3.1 lnc-RASGRP3-3:1
4.0 LINC01317:5
4.1 LINC01317:5
5.0 LINC01317:5
5.1 LINC01317:5
5.2 LINC01317:5