Transcript: LINC01333:1

Basic information

LNCipedia transcript ID: LINC01333:1 
LNCipedia gene ID: LINC01333
Ensembl Gene ID: ENSG00000251041
Ensembl Transcript ID: ENST00000512458
Location (hg38): chr5:74321631-74340152
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 550 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009426; ENST00000512458; ENST00000512458.1; CTD-2275D24.1-001; OTTHUMT00000368994.1; NONHSAT102155
Alternative gene names: XLOC_004429; linc-HEXB-1; ENSG00000251041; CTD-2275D24.1; ENSG00000251041.1; OTTHUMG00000162457.1; ; AC106732.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.4475 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01333:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HEXB-1:1
3.1 lnc-HEXB-1:1
4.0 LINC01333:1
4.1 LINC01333:1
5.0 LINC01333:1
5.1 LINC01333:1
5.2 LINC01333:1