Transcript: LINC01336:4

Basic information

LNCipedia transcript ID: LINC01336:4 
HGNC Gene Symbol: LINC01336    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1336
Ensembl Gene ID: ENSG00000250889
Ensembl Transcript ID: ENST00000503568
RefSeq ID: NR_126375
Location (hg38): chr5:75047719-75052643
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009703; ENST00000503568; ENST00000503568.1; RP11-229C3.2-001; OTTHUMT00000369034.1; NONHSAT102194; NR_126375; NR_126375.1
Alternative gene names: XLOC_004890; linc-GCNT4; ENSG00000250889; RP11-229C3.2; ENSG00000250889.2; OTTHUMG00000162467.2; LINC01336;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -470.6907 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01336:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD31-1:3
3.1 lnc-ANKRD31-1:3
4.0 LINC01336:4
4.1 LINC01336:4
5.0 LINC01336:4
5.1 LINC01336:4
5.2 LINC01336:4