Transcript: LINC01337:2

Basic information

LNCipedia transcript ID: LINC01337:2 
HGNC Gene Symbol: LINC01337    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1337
Ensembl Gene ID: ENSG00000251221
Ensembl Transcript ID: ENST00000515871
Location (hg38): chr5:80608623-80622524
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009713; ENST00000515871; ENST00000515871.1; CTC-325J23.3-001; OTTHUMT00000369462.1; NONHSAT102409
Alternative gene names: XLOC_004905; linc-ANKRD34B; ENSG00000251221; CTC-325J23.3; ENSG00000251221.1; OTTHUMG00000162533.1; LINC01337; TCONS_00009713


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.5333 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01337:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHFR-1:1
3.1 lnc-DHFR-1:1
4.0 LINC01337:2
4.1 LINC01337:2
5.0 LINC01337:2
5.1 LINC01337:2
5.2 LINC01337:2