Transcript: LINC01338:4

Basic information

LNCipedia transcript ID: LINC01338:4 
HGNC Gene Symbol: LINC01338    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1338
Ensembl Gene ID: ENSG00000281327
Ensembl Transcript ID: ENST00000627179
RefSeq ID: NR_105016
Location (hg38): chr5:82850864-82859836
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 632 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000627179.1; NR_105016.1
Alternative gene names: ENSG00000281327.1; LINC01338;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -126.7149 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01338:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01338:4
4.1 LINC01338:4
5.0 LINC01338:4
5.1 LINC01338:4
5.2 LINC01338:4