Transcript: LINC01339:4

Basic information

LNCipedia transcript ID: LINC01339:4 
HGNC Gene Symbol: LINC01339    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1339
Ensembl Gene ID: ENSG00000248555
Ensembl Transcript ID: ENST00000505712
Location (hg38): chr5:90158339-90289938
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505712; ENST00000505712.1; RP11-61G23.1-001; OTTHUMT00000369772.2; NONHSAT102721; ENST00000505712.5
Alternative gene names: ENSG00000248555; RP11-61G23.1; ENSG00000248555.2; OTTHUMG00000162621.3; ENSG00000248555.6; LINC01339;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -314.4004 non-coding 
CPAT coding probability 2.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01339:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CETN3-2:3
3.1 lnc-CETN3-3:3
4.0 LINC01339:4
4.1 LINC01339:4
5.0 LINC01339:4
5.1 LINC01339:4
5.2 LINC01339:4