Transcript: LINC01341:9

Basic information

LNCipedia transcript ID: LINC01341:9 
HGNC Gene Symbol: LINC01341    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1341
Ensembl Gene ID: ENSG00000227953
Ensembl Transcript ID: ENST00000505748
Location (hg38): chr1:246776091-246789600
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 595 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000430; ENST00000505748.1; RP11-439E19.3-004; OTTHUMT00000364302.1; NONHSAT139943; ENST00000505748.5
Alternative gene names: XLOC_000643; linc-VN1R5-3; ENSG00000227953.2; RP11-439E19.3; OTTHUMG00000040519.2; ENSG00000227953.6; LINC01341;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.3078 non-coding 
CPAT coding probability 6.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01341:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCCPDH-1:4
3.1 lnc-SCCPDH-1:6
4.0 LINC01341:9
4.1 LINC01341:9
5.0 LINC01341:9
5.1 LINC01341:9
5.2 LINC01341:9