Transcript: LINC01343:1

Basic information

LNCipedia transcript ID: LINC01343:1 
HGNC Gene Symbol: LINC01343    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1343
Ensembl Gene ID: ENSG00000237290
Ensembl Transcript ID: ENST00000431311
RefSeq ID: NR_038928
Location (hg38): chr1:38209034-38214767
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2283 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000505; ENST00000431311; ENST00000431311.1; RP11-214L19.1-001; OTTHUMT00000001202.1; NONHSAT002507; NR_038928; NR_038928.1
Alternative gene names: XLOC_000788; linc-POU3F1-2; ENSG00000237290; RP11-214L19.1; ENSG00000237290.1; OTTHUMG00000000479.1; LINC01343;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.7255 non-coding 
CPAT coding probability 20.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01343:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POU3F1-1:1
3.1 lnc-POU3F1-1:1
4.0 LINC01343:1
4.1 LINC01343:1
5.0 LINC01343:1
5.1 LINC01343:1
5.2 LINC01343:1