Transcript: LINC01352:1

Basic information

LNCipedia transcript ID: LINC01352:1 
HGNC Gene Symbol: LINC01352    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1352
Ensembl Gene ID: ENSG00000238078
Ensembl Transcript ID: ENST00000431347
RefSeq ID: NR_110797
Location (hg38): chr1:220829255-220832429
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 962 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000431347; ENST00000431347.1; RP11-295M18.2-001; OTTHUMT00000090916.1; NONHSAT009622; NR_110797.1
Alternative gene names: ENSG00000238078; RP11-295M18.2; ENSG00000238078.1; OTTHUMG00000037355.1; LINC01352;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.8487 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01352:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MARC1-1:1
3.1 lnc-MARC1-1:2
4.0 LINC01352:1
4.1 LINC01352:1
5.0 LINC01352:1
5.1 LINC01352:1
5.2 LINC01352:1