Transcript: LINC01354:1

Basic information

LNCipedia transcript ID: LINC01354:1 
HGNC Gene Symbol: LINC01354    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1354
Ensembl Gene ID: ENSG00000231768
Ensembl Transcript ID: ENST00000435574
RefSeq ID: NR_038426
Location (hg38): chr1:234527891-234531779
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2860 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000435574; ENST00000435574.1; RP5-855F14.1-001; OTTHUMT00000092696.1; NONHSAT010286; NR_038426; NR_038426.1
Alternative gene names: ENSG00000231768; RP5-855F14.1; ENSG00000231768.1; OTTHUMG00000037976.1; LINC01354;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.049 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01354:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TARBP1-1:1
3.1 lnc-TARBP1-2:1
4.0 LINC01354:1
4.1 LINC01354:1
5.0 LINC01354:1
5.1 LINC01354:1
5.2 LINC01354:1