Transcript: LINC01358:11

Basic information

LNCipedia transcript ID: LINC01358:11 
LNCipedia gene ID: LINC01358
Location (hg38): chr1:59126989-59132833
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000963; NONHSAT003550
Alternative gene names: XLOC_000220; linc-FGGY-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.9317 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01358:11 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGGY-3:1
3.1 lnc-FGGY-3:1
4.0 LINC01358:11
4.1 LINC01358:11
5.0 LINC01358:11
5.1 LINC01358:11
5.2 LINC01358:11