Transcript: LINC01358:13

Basic information

LNCipedia transcript ID: LINC01358:13 
HGNC Gene Symbol: LINC01358    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1358
Ensembl Gene ID: ENSG00000237352
Ensembl Transcript ID: ENST00000625548
Location (hg38): chr1:59132473-59240555
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 874 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625548.1
Alternative gene names: ENSG00000237352.3; LINC01358;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -143.2198 non-coding 
CPAT coding probability 3.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01358:13 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01358:13
4.1 LINC01358:13
5.0 LINC01358:13
5.1 LINC01358:13
5.2 LINC01358:13