Transcript: LINC01358:15

Basic information

LNCipedia transcript ID: LINC01358:15 
LNCipedia gene ID: LINC01358
Location (hg38): chr1:59147641-59150088
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 486 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00002046
Alternative gene names: XLOC_000221; linc-FGGY-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.9939 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01358:15 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGGY-2:1
3.1 lnc-FGGY-2:1
4.0 LINC01358:15
4.1 LINC01358:15
5.0 LINC01358:15
5.1 LINC01358:15
5.2 LINC01358:15