Transcript: LINC01358:3

Basic information

LNCipedia transcript ID: LINC01358:3 
HGNC Gene Symbol: LINC01358    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1358
Ensembl Gene ID: ENSG00000237352
Ensembl Transcript ID: ENST00000447329
Location (hg38): chr1:59020387-59033063
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 530 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447329; ENST00000447329.1; RP4-794H19.4-002; OTTHUMT00000023037.2; NONHSAT003543; ENST00000447329.5
Alternative gene names: ENSG00000230812; RP4-794H19.4; ENSG00000230812.1; OTTHUMG00000008373.2; ENSG00000237352.3; LINC01358;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -228.8199 non-coding 
CPAT coding probability 5.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01358:3 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGGY-4:1
3.1 lnc-FGGY-4:1
4.0 LINC01358:3
4.1 LINC01358:3
5.0 LINC01358:3
5.1 LINC01358:3
5.2 LINC01358:3