Transcript: LINC01366:5

Basic information

LNCipedia transcript ID: LINC01366:5 
HGNC Gene Symbol: LINC01366    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1366
Ensembl Gene ID: ENSG00000235172
Ensembl Transcript ID: ENST00000521471
Location (hg38): chr5:170331429-170333760
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 847 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521471; ENST00000521471.1; CTB-114C7.3-002; OTTHUMT00000371725.1; NONHSAT105048; ENST00000521471.5
Alternative gene names: ENSG00000235172; CTB-114C7.3; ENSG00000235172.3; OTTHUMG00000163120.1; ENSG00000235172.7; LINC01366;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.5321 non-coding 
CPAT coding probability 31.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01366:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNIP1-1:2
3.1 lnc-KCNIP1-1:2
4.0 LINC01366:5
4.1 LINC01366:5
5.0 LINC01366:5
5.1 LINC01366:5
5.2 LINC01366:5