Transcript: LINC01370:10

Basic information

LNCipedia transcript ID: LINC01370:10 
LNCipedia gene ID: LINC01370
Ensembl Gene ID: ENSG00000233415
Ensembl Transcript ID: ENST00000423153
Location (hg38): chr20:40031585-40043889
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 640 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423153; ENST00000423153.1; RP11-101E14.3-001; OTTHUMT00000079228.1; NONHSAT079736
Alternative gene names: ENSG00000233415; RP11-101E14.3; ENSG00000233415.1; OTTHUMG00000032470.1; HI-LNC25; AL133419.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.5138 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01370:10 no no no no

Available literature

  1. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TOP1-2:1
3.1 lnc-TOP1-2:1
4.0 LINC01370:10
4.1 LINC01370:10
5.0 LINC01370:10
5.1 LINC01370:10
5.2 LINC01370:10