Transcript: LINC01370:7

Basic information

LNCipedia transcript ID: LINC01370:7 
HGNC Gene Symbol: LINC01370    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1370
Ensembl Gene ID: ENSG00000237767
Ensembl Transcript ID: ENST00000432633
Location (hg38): chr20:40004477-40008245
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 538 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432633; ENST00000432633.1; RP11-101E14.2-001; OTTHUMT00000079226.1; NONHSAT079734
Alternative gene names: ENSG00000237767; RP11-101E14.2; ENSG00000237767.1; OTTHUMG00000032469.1; LINC01370; HI-LNC25


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.9446 non-coding 
CPAT coding probability 0.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01370:7 no no no no

Available literature

  1. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DHX35-2:1
3.1 lnc-DHX35-2:1
4.0 LINC01370:7
4.1 LINC01370:7
5.0 LINC01370:7
5.1 LINC01370:7
5.2 LINC01370:7