Transcript: LINC01370:9

Basic information

LNCipedia transcript ID: LINC01370:9 
LNCipedia gene ID: LINC01370
Location (hg38): chr20:40030386-40043889
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2995 bp
Exons: 5
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT079735; FPKM1_group_19207_transcript_11
Alternative gene names: HI-LNC25


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.5138 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01370:9 no no no no

Available literature

  1. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHX35-2:9
4.0 LINC01370:9
4.1 LINC01370:9
5.0 LINC01370:9
5.1 LINC01370:9
5.2 LINC01370:9