Transcript: LINC01381:1

Basic information

LNCipedia transcript ID: LINC01381:1 
HGNC Gene Symbol: LINC01381    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1381
Ensembl Gene ID: ENSG00000230452
Ensembl Transcript ID: ENST00000431650
RefSeq ID: NR_132378
Location (hg38): chr2:25204313-25209202
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 466 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002860; ENST00000431650.1; AC012457.2-001; OTTHUMT00000324840.1; NONHSAT069645; NR_132378.1
Alternative gene names: XLOC_001399; linc-RAB10-2; ENSG00000230452.1; AC012457.2; OTTHUMG00000152010.1; LINC01381; TCONS_00002860; DADOT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1479 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01381:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EFR3B-2:1
3.1 lnc-EFR3B-2:1
4.0 LINC01381:1
4.1 LINC01381:1
5.0 LINC01381:1
5.1 LINC01381:1
5.2 LINC01381:1