Transcript: LINC01384:4

Basic information

LNCipedia transcript ID: LINC01384:4 
HGNC Gene Symbol: LINC01384    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1384
Ensembl Gene ID: ENSG00000237396
Ensembl Transcript ID: ENST00000422494
RefSeq ID: NR_109883
Location (hg38): chr20:22587522-22607517
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 659 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028019; ENST00000422494; ENST00000422494.1; RP4-788L20.3-001; OTTHUMT00000078294.1; NONHSAT078998; NR_109883; NR_109883.1
Alternative gene names: XLOC_013685; linc-FOXA2-2; ENSG00000237396; RP4-788L20.3; ENSG00000237396.1; OTTHUMG00000032044.1; LINC01384;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.0599 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01384:4 no no no no

Available literature

  1. Liang (2018), LncRNA-NEF antagonized epithelial to mesenchymal transition and cancer metastasis via cis-regulating FOXA2 and inactivating Wnt/β-catenin signaling., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-2:4
3.1 lnc-FOXA2-1:4
4.0 LINC01384:4
4.1 LINC01384:4
5.0 LINC01384:4
5.1 LINC01384:4
5.2 LINC01384:4