Transcript: LINC01388:1

Basic information

LNCipedia transcript ID: LINC01388:1 
LNCipedia gene ID: LINC01388
Location (hg38): chr9:112716-113754
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000416242; ENST00000416242.1; RP11-143M1.4-001; OTTHUMT00000051455.1; NONHSAT129898
Alternative gene names: ENSG00000231808; RP11-143M1.4; ENSG00000231808.1; OTTHUMG00000019424.1; TCONS_l2_00029888


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01388:1 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4-1:1
3.1 lnc-FOXD4-1:1
4.0 LINC01388:1
4.1 LINC01388:1
5.0 LINC01388:1
5.1 LINC01388:1
5.2 LINC01388:1