Transcript: LINC01388:13

Basic information

LNCipedia transcript ID: LINC01388:13 
LNCipedia gene ID: LINC01388
Ensembl Gene ID: ENSG00000227917
Ensembl Transcript ID: ENST00000435421
Location (hg38): chr9:100804-102850
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 612 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435421; ENST00000435421.1; RP11-143M1.3-001; OTTHUMT00000055437.1; NONHSAT147668
Alternative gene names: ENSG00000227917; RP11-143M1.3; ENSG00000227917.1; OTTHUMG00000021018.1; ENSG00000227917.2; TCONS_l2_00029888; AL449043.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.3837 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01388:13 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4-2:2
3.1 lnc-FOXD4-2:2
4.0 lnc-FOXD4-2:2
4.1 LINC01388:13
5.0 LINC01388:13
5.1 LINC01388:13
5.2 LINC01388:13