Transcript: LINC01388:2

Basic information

LNCipedia transcript ID: LINC01388:2 
HGNC Gene Symbol: LINC01388    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1388
Ensembl Gene ID: ENSG00000231808
Ensembl Transcript ID: ENST00000416242
Location (hg38): chr9:112713-113754
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 416 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416242.2
Alternative gene names: ENSG00000231808.2; LINC01388; TCONS_l2_00029888


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01388:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01388:2
4.1 LINC01388:2
5.0 LINC01388:2
5.1 LINC01388:2
5.2 LINC01388:2