Transcript: LINC01389:8

Basic information

LNCipedia transcript ID: LINC01389:8 
HGNC Gene Symbol: LINC01389    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1389
Ensembl Gene ID: ENSG00000225762
Ensembl Transcript ID: ENST00000420876
Location (hg38): chr1:47380928-47408477
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 483 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000516; ENST00000420876.1; RP11-511I2.2-001; OTTHUMT00000021847.2; NONHSAT003078
Alternative gene names: XLOC_000822; linc-STIL-2; ENSG00000225762.1; RP11-511I2.2; OTTHUMG00000007965.2; LINC01389;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.0789 non-coding 
CPAT coding probability 3.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01389:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STIL-1:2
3.1 lnc-STIL-1:2
4.0 LINC01389:8
4.1 LINC01389:8
5.0 LINC01389:8
5.1 LINC01389:8
5.2 LINC01389:8