Transcript: LINC01391:3

Basic information

LNCipedia transcript ID: LINC01391:3 
HGNC Gene Symbol: LINC01391    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1391
Ensembl Gene ID: ENSG00000244578
Ensembl Transcript ID: ENST00000477059
Location (hg38): chr3:138940428-138942578
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 483 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000477059; ENST00000477059.1; RP11-548O1.3-003; OTTHUMT00000358018.1; NONHSAT092346
Alternative gene names: ENSG00000244578; RP11-548O1.3; ENSG00000244578.1; OTTHUMG00000159892.1; LINC01391;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -363.4485 non-coding 
CPAT coding probability 6.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01391:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXL2-1:3
3.1 lnc-FOXL2-1:3
4.0 LINC01391:3
4.1 LINC01391:3
5.0 LINC01391:3
5.1 LINC01391:3
5.2 LINC01391:3