Transcript: LINC01394:27

Basic information

LNCipedia transcript ID: LINC01394:27 
LNCipedia gene ID: LINC01394
Ensembl Gene ID: ENSG00000261730
Ensembl Transcript ID: ENST00000568244
Location (hg38): chr6:1383790-1385066
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1277 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568244.1; RP4-668J24.2-001; OTTHUMT00000431204.1; NONHSAT106466
Alternative gene names: ENSG00000261730.1; RP4-668J24.2; OTTHUMG00000175869.1; AL034346.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.3132 non-coding 
CPAT coding probability 64.63% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01394:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GMDS-2:1
4.0 lnc-GMDS-2:1
4.1 lnc-GMDS-3:19
5.0 lnc-GMDS-3:19
5.1 LINC01394:8
5.2 LINC01394:27