Transcript: LINC01398:2

Basic information

LNCipedia transcript ID: LINC01398:2 
HGNC Gene Symbol: LINC01398    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1398
Ensembl Gene ID: ENSG00000224863
Ensembl Transcript ID: ENST00000416581
RefSeq ID: NR_121680
Location (hg38): chr1:46446673-46449704
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1129 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000514; ENST00000416581; ENST00000416581.1; RP5-1109J22.2-001; OTTHUMT00000021455.1; NONHSAT003014; NR_121680; NR_121680.1
Alternative gene names: XLOC_000818; linc-LRRC41-2; ENSG00000224863; RP5-1109J22.2; ENSG00000224863.1; OTTHUMG00000007814.1; ENSG00000224863.2; LINC01398;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.2013 non-coding 
CPAT coding probability 23.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01398:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KNCN-1:1
3.1 lnc-KNCN-1:1
4.0 LINC01398:2
4.1 LINC01398:2
5.0 LINC01398:2
5.1 LINC01398:2
5.2 LINC01398:2