Transcript: LINC01402:1

Basic information

LNCipedia transcript ID: LINC01402:1 
HGNC Gene Symbol: LINC01402    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1402
Ensembl Gene ID: ENSG00000228139
Ensembl Transcript ID: ENST00000422226
RefSeq ID: NR_126557
Location (hg38): chrX:120117642-120119700
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 279 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017087; ENST00000422226; ENST00000422226.1; GS1-421I3.4-001; OTTHUMT00000058084.1; NONHSAT138361; NR_126557; NR_126557.1
Alternative gene names: XLOC_008222; linc-RHOXF1-1; ENSG00000228139; GS1-421I3.4; ENSG00000228139.1; OTTHUMG00000022291.1; LINC01402; TCONS_00017087


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.2751 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01402:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RHOXF1-1:1
3.1 lnc-RHOXF1-1:1
4.0 LINC01402:1
4.1 LINC01402:1
5.0 LINC01402:1
5.1 LINC01402:1
5.2 LINC01402:1