Transcript: LINC01405:7

Basic information

LNCipedia transcript ID: LINC01405:7 
HGNC Gene Symbol: LINC01405    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1405
Ensembl Gene ID: ENSG00000185847
Ensembl Transcript ID: ENST00000547607
Location (hg38): chr12:110936607-110956832
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 674 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547607; ENST00000547607.1; RP1-46F2.2-004; OTTHUMT00000404686.1; NONHSAT030713
Alternative gene names: ENSG00000185847; RP1-46F2.2; ENSG00000185847.3; OTTHUMG00000169536.1; ENSG00000185847.7; LINC01405;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.3353 non-coding 
CPAT coding probability 4.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01405:7 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC63-2:5
3.1 lnc-CCDC63-2:5
4.0 LINC01405:7
4.1 LINC01405:7
5.0 LINC01405:7
5.1 LINC01405:7
5.2 LINC01405:7