Transcript: LINC01411:1

Basic information

LNCipedia transcript ID: LINC01411:1 
LNCipedia gene ID: LINC01411
Location (hg38): chr5:174336295-174526454
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 776 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000515513.1; RP11-267A15.1-003; OTTHUMT00000371778.1; NONHSAT105237
Alternative gene names: ENSG00000249306.1; RP11-267A15.1; OTTHUMG00000163128.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.9246 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.170979218
seqAAMNLHQPEVRRASRSLQPGLFLQMGKLSPREGAMKDV
covF1Prop0.147058824

In stringent set: no

Locus conservation

Locus conservation?
LINC01411:1 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSX2-4:1
4.0 LINC01411:1
4.1 LINC01411:1
5.0 LINC01411:1
5.1 LINC01411:1
5.2 LINC01411:1