Transcript: LINC01411:10

Basic information

LNCipedia transcript ID: LINC01411:10 
HGNC Gene Symbol: LINC01411    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1411
Ensembl Gene ID: ENSG00000249306
Ensembl Transcript ID: ENST00000511707
Location (hg38): chr5:174503815-174520665
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511707.1; RP11-267A15.1-005; OTTHUMT00000371780.1; NONHSAT105242; ENST00000511707.5
Alternative gene names: ENSG00000249306.1; RP11-267A15.1; OTTHUMG00000163128.1; ENSG00000249306.5; LINC01411


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0207 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01411:10 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSX2-4:5
4.0 LINC01411:10
4.1 LINC01411:10
5.0 LINC01411:10
5.1 LINC01411:10
5.2 LINC01411:10