Transcript: LINC01411:13

Basic information

LNCipedia transcript ID: LINC01411:13 
LNCipedia gene ID: LINC01411
Location (hg38): chr5:174524111-174528798
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 794 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT105245
Alternative gene names: RP11-267A15.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.2955 non-coding 
CPAT coding probability 2.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01411:13 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSX2-4:9
4.0 LINC01411:13
4.1 LINC01411:13
5.0 LINC01411:13
5.1 LINC01411:13
5.2 LINC01411:13