Transcript: LINC01411:2

Basic information

LNCipedia transcript ID: LINC01411:2 
HGNC Gene Symbol: LINC01411    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1411
Ensembl Gene ID: ENSG00000249306
Ensembl Transcript ID: ENST00000515513
Location (hg38): chr5:174336295-174526448
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 770 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515513.5
Alternative gene names: ENSG00000249306.5; LINC01411; RP11-267A15.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -51.9246 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.170979218
covF1Prop0.147058824
seqAAMNLHQPEVRRASRSLQPGLFLQMGKLSPREGAMKDV

In stringent set: no

Locus conservation

Locus conservation?
LINC01411:2 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01411:2
4.1 LINC01411:2
5.0 LINC01411:2
5.1 LINC01411:2
5.2 LINC01411:2