Transcript: LINC01411:3

Basic information

LNCipedia transcript ID: LINC01411:3 
LNCipedia gene ID: LINC01411
Location (hg38): chr5:174336354-174528715
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 831 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000507361.1; RP11-267A15.1-001; OTTHUMT00000371776.1; NONHSAT105238
Alternative gene names: ENSG00000249306.1; RP11-267A15.1; OTTHUMG00000163128.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.9246 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 1 coding 
covF1Prop0.147058824
seqAAMNLHQPEVRRASRSLQPGLFLQMGKLSPREGAMKDV
orfFrame6.170979218

In stringent set: no

Locus conservation

Locus conservation?
LINC01411:3 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSX2-4:2
4.0 LINC01411:3
4.1 LINC01411:3
5.0 LINC01411:3
5.1 LINC01411:3
5.2 LINC01411:3