Transcript: LINC01411:4

Basic information

LNCipedia transcript ID: LINC01411:4 
LNCipedia gene ID: LINC01411
RefSeq ID: NR_125806
Location (hg38): chr5:174336354-174527139
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1079 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125806; NR_125806.1
Alternative gene names: RP11-267A15.1; LINC01411


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -51.9246 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01411:4 no no no no

Available literature

  1. Hu (2014), Identification of prostate cancer LncRNAs by RNA-Seq., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSX2-4:10
4.0 LINC01411:4
4.1 LINC01411:4
5.0 LINC01411:4
5.1 LINC01411:4
5.2 LINC01411:4