Transcript: LINC01416:1

Basic information

LNCipedia transcript ID: LINC01416:1 
HGNC Gene Symbol: LINC01416    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1416
Ensembl Gene ID: ENSG00000260930
Ensembl Transcript ID: ENST00000563553
RefSeq ID: NR_110755
Location (hg38): chr18:55881688-55920199
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2310 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000563553.1; RP11-214L13.1-001; OTTHUMT00000431615.1; NONHSAT059386; NR_110755; NR_110755.1
Alternative gene names: ENSG00000260930.1; RP11-214L13.1; OTTHUMG00000176192.1; LINC01416;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.227 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01416:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006305.1-1:1
4.0 LINC01416:1
4.1 LINC01416:1
5.0 LINC01416:1
5.1 LINC01416:1
5.2 LINC01416:1