Transcript: LINC01422:6

Basic information

LNCipedia transcript ID: LINC01422:6 
LNCipedia gene ID: LINC01422
Ensembl Gene ID: ENSG00000235271
Ensembl Transcript ID: ENST00000438113
Location (hg38): chr22:26903340-26920611
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438113; ENST00000438113.1; RP1-90L6.3-001; OTTHUMT00000322346.1; NONHSAT084570
Alternative gene names: ENSG00000235271; RP1-90L6.3; ENSG00000235271.1; OTTHUMG00000151357.1; ENSG00000235271.5; LINC01422;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.445 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01422:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CRYBA4-4:2
3.1 lnc-CRYBA4-4:2
4.0 LINC01422:6
4.1 LINC01422:6
5.0 LINC01422:6
5.1 LINC01422:6
5.2 LINC01422:6