Transcript: LINC01423:3

Basic information

LNCipedia transcript ID: LINC01423:3 
HGNC Gene Symbol: LINC01423    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1423
Ensembl Gene ID: ENSG00000231231
Ensembl Transcript ID: ENST00000414189
Location (hg38): chr21:38323635-38333364
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 608 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028924; ENST00000414189; ENST00000414189.1; AP001422.3-002; OTTHUMT00000207543.1; NONHSAT082087; ENST00000414189.5
Alternative gene names: XLOC_014072; linc-DSCR4; ENSG00000231231; AP001422.3; ENSG00000231231.1; OTTHUMG00000090768.1; ENSG00000231231.5; LINC01423;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.6644 non-coding 
CPAT coding probability 3.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01423:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERG-1:2
3.1 lnc-ERG-1:2
4.0 LINC01423:3
4.1 LINC01423:3
5.0 LINC01423:3
5.1 LINC01423:3
5.2 LINC01423:3