Transcript: LINC01424:3

Basic information

LNCipedia transcript ID: LINC01424:3 
HGNC Gene Symbol: LINC01424    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1424
Ensembl Gene ID: ENSG00000236519
Ensembl Transcript ID: ENST00000417820
Location (hg38): chr21:44802577-44804717
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1031 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028857; ENST00000417820.1; AL773604.8-001; OTTHUMT00000206559.1; NONHSAT082881
Alternative gene names: XLOC_013973; linc-C21orf70-5; ENSG00000236519.1; AL773604.8; OTTHUMG00000090255.1; LINC01424;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.0875 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01424:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KRTAP10-12-1:2
3.1 lnc-KRTAP10-12-1:2
4.0 LINC01424:3
4.1 LINC01424:3
5.0 LINC01424:3
5.1 LINC01424:3
5.2 LINC01424:3