Transcript: LINC01426:1

Basic information

LNCipedia transcript ID: LINC01426:1 
HGNC Gene Symbol: LINC01426    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1426
Ensembl Gene ID: ENSG00000234380
Ensembl Transcript ID: ENST00000420877
Location (hg38): chr21:34745757-34784886
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2632 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420877.1; AP000330.8-001; OTTHUMT00000194139.1; NONHSAT081888
Alternative gene names: ENSG00000234380.1; AP000330.8; OTTHUMG00000086233.1; LINC01426;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9862 non-coding 
CPAT coding probability 9.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01426:1 no no no no

Available literature

  1. Morton (2014), Identification of mRNAs and lincRNAs associated with lung cancer progression using next-generation RNA sequencing from laser micro-dissected archival FFPE tissue specimens., Lung Cancer

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLIC6-2:1
4.0 LINC01426:1
4.1 LINC01426:1
5.0 LINC01426:1
5.1 LINC01426:1
5.2 LINC01426:1