Transcript: LINC01426:4

Basic information

LNCipedia transcript ID: LINC01426:4 
HGNC Gene Symbol: LINC01426    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1426
Ensembl Gene ID: ENSG00000234380
Ensembl Transcript ID: ENST00000419921
Location (hg38): chr21:34745837-34748367
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 767 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028840; ENST00000419921.1; AP000330.8-002; OTTHUMT00000194140.1
Alternative gene names: XLOC_013928; linc-CBR1-2; ENSG00000234380.1; AP000330.8; OTTHUMG00000086233.1; LINC01426;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.4801 non-coding 
CPAT coding probability 6.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01426:4 no no no no

Available literature

  1. Morton (2014), Identification of mRNAs and lincRNAs associated with lung cancer progression using next-generation RNA sequencing from laser micro-dissected archival FFPE tissue specimens., Lung Cancer

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLIC6-2:1
3.1 lnc-CLIC6-2:2
4.0 LINC01426:4
4.1 LINC01426:4
5.0 LINC01426:4
5.1 LINC01426:4
5.2 LINC01426:4