Transcript: LINC01427:4

Basic information

LNCipedia transcript ID: LINC01427:4 
HGNC Gene Symbol: LINC01427    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1427
Ensembl Gene ID: ENSG00000225321
Ensembl Transcript ID: ENST00000420928
Location (hg38): chr20:22280228-22282672
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 504 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028017; ENST00000420928; ENST00000420928.1; RP5-828K20.2-001; OTTHUMT00000078287.1; NONHSAT078970
Alternative gene names: XLOC_013679; linc-NKX2-2-1; ENSG00000225321; RP5-828K20.2; ENSG00000225321.1; OTTHUMG00000032039.1; ENSG00000225321.2; LINC01427;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.9878 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01427:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-8:1
3.1 lnc-FOXA2-8:1
4.0 LINC01427:4
4.1 LINC01427:4
5.0 LINC01427:4
5.1 LINC01427:4
5.2 LINC01427:4