Transcript: LINC01429:2

Basic information

LNCipedia transcript ID: LINC01429:2 
HGNC Gene Symbol: LINC01429    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1429
Ensembl Gene ID: ENSG00000227964
Ensembl Transcript ID: ENST00000438154
Location (hg38): chr20:51831797-51862912
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2326 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028064; ENST00000438154; ENST00000438154.1; RP5-1112F19.2-001; OTTHUMT00000258921.1
Alternative gene names: XLOC_013794; linc-SALL4; ENSG00000227964; RP5-1112F19.2; ENSG00000227964.1; OTTHUMG00000134283.1; LINC01429;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.8599 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01429:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SALL4-1:1
3.1 lnc-SALL4-1:1
4.0 LINC01429:2
4.1 LINC01429:2
5.0 LINC01429:2
5.1 LINC01429:2
5.2 LINC01429:2