Transcript: LINC01431:9

Basic information

LNCipedia transcript ID: LINC01431:9 
HGNC Gene Symbol: LINC01431    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1431
Ensembl Gene ID: ENSG00000232645
Ensembl Transcript ID: ENST00000444981
Location (hg38): chr20:23356594-23357855
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028022; ENST00000444981.1; RP3-322G13.5-002; OTTHUMT00000078322.1; NONHSAT079052; ENST00000444981.5
Alternative gene names: XLOC_013693; linc-CD93-1; ENSG00000232645.1; RP3-322G13.5; OTTHUMG00000032063.1; ENSG00000232645.5; LINC01431;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -275.0873 non-coding 
CPAT coding probability 7.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01431:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NAPB-1:6
3.1 lnc-NAPB-1:6
4.0 LINC01431:9
4.1 LINC01431:9
5.0 LINC01431:9
5.1 LINC01431:9
5.2 LINC01431:9